How Payroll Systems Help Business Owners What is a payroll system? Paychex vs QuickBooks Payroll – Which Payroll System is Right for You?.How Payroll Systems Help Business Owners.Ideal for small to medium sized companiesĭon’t have time to read this whole review? Skip ahead to:.Integrates with 650+ business apps and software.You may also be interested in: QuickBooks for Restaurants: The Complete Guide Finding the Best Payroll System for Small Businesses QuickBooks Online This review of QuickBooks Payroll vs Paychex takes into consideration the features of each software, more than 200 users’ reviews across four top rated review sites, and my personal assessment of each solution. These HR and payroll solutions help businesses, both small and large alike, to manage their income and expenses as well as keep track of the financial state of their businesses. Paychex and QuickBooks payroll are two of the most popular payroll solutions on the market. We earn from qualifying purchases through our links, but this does not influence our evaluations. Our product review team dedicates hours of research, fact-checking and testing to recommend the best solutions to business owners.